Java wrappers for interacting with external bioinformatics tools.

  • Class Summary 
    Class Description
    BlastLikeToXMLConverter

    A class that converts the raw output from a variety of bioinformatics software and converts it to XML that will validate against the biojava:BlastLikeDataSetCollection DTD.
    Meme

    The results of a meme run.
    PdbToXMLConverter

    A class that converts Protein Data Bank (PDB) to XML that will validate against the biojava:MacromolecularStructure DTD.