Parsers which offer XML representations of the output from common bioinformatics tools.

  • Class Summary 
    Class Description
    BlastLikeSAXParser

    A facade class allowing for direct SAX2-like parsing of the native output from Blast-like bioinformatics software.
    ClustalWAlignmentSAXParser

    A SAX2 parser for dealing with a multiple sequence alignment as produced by ClustalW outputing .aln format.
    FastaSearchSAXParser

    FastaSearchSAXParser is a SAX2 compliant parser for '-m 10' format output from the the Fasta search program (see the Fasta documentation for details of this format).
    FastaSequenceSAXParser

    A SAX2 parser for dealing with multiple sequences in FASTA format.
    PdbSAXParser

    A SAX2 parser for dealing with native PDB files.
    SequenceAlignmentSAXParser

    A SAX2 parser for dealing with a sequence alignments.