AbstractChangeable

Useful base-class for objects implementing Changeable

BeanAsMap   ChangeAdapter

This is a ChangeListener that ignores everything.

ChangeEvent

Event which encapsulates a change in any mutable BioJava object.

ChangeForwarder

This is a ChangeListener that is designed to adapt events of one type from one source to events of another type emitted by another source.

ChangeForwarder.Retyper

A ChangeForwarder that systematically uses a given type and wraps the old event.

ChangeListener.AlwaysVetoListener

An implementation that always vetoes everything.

ChangeListener.ChangeEventRecorder

A listener that remembers the ChangeEvent of the last change.

ChangeListener.LoggingListener

A listener that writes information about the event stream to a PrintStream.

ChangeSupport

A utility class to provide management for informing ChangeListeners of ChangeEvents.

ChangeType

Class for all constants which are used to indicate change types.

ClassTools

Utility methods for manipulating class objects and resources.

Constants

Some usefull constants for working with binary files.

ExecRunner

Makes running external executables easier, optionally under a watched thread.

FileAsList

FileAsList creates a writable List implementation backed by a random access file.

IndexedChangeHub

implements Changeable support with a ChangeHub that stores ChangeListener by key.

JDBCConnectionPool

Really simple connection pool for JDBC databases.

JDBCPooledDataSource

Returns a DataSource that implements connection pooling Uses Jakarta Commons DBCP and Pool packages.

ListTools   ListTools.Doublet   ListTools.SeriesList

A list that represents a series of values.

ListTools.Triplet   MergingIterator   MergingSet   ObjectUtil

utility methods for implementing the equals() and hashCode() methods of Objects.

OverlayMap

Overlap one map onto another.

ParseErrorEvent

Event which signals a bad line when parsing a record.

ProcessTools Deprecated.

preferable to use org.biojava.utils.ExecRunner or the org.biojava.utils.process package.

RepeatedCharSequence   Services

Utility methods for handling META-INF/services files

SimpleThreadPool

SimpleThreadPool is a basic implementation of ThreadPool for use where we don't wish to introduce a dependency on a 3rd-party pool.

SingletonList   SmallMap

Lightweight implementation of Map which uses little memory to store a small number of mappings, at the expense of scalability.

SmallSet

Lightweight implementation of Set which uses little memory to store a small number of items, at the expense of scalability.

StaticMemberPlaceHolder   TriState

Class that represents the tristate values possible in a logical operation: true, false and indeterminate.

TypedProperties

a sub-class of java.util.Properties that provides the same constructors, adds two convenient load methods to load the properties from files and, most importantly, adds getPropertyAsXXX() methods to get a property as an object of type XXX.

Unchangeable

This is a utility implementation of Changeable that doesn't fire any events or keep references to any listeners.