It looks like the problem is that yt uses OpenMP whereas OpenMP doesn't support atomic operations:
In file included from /home/alex/Python/include/python3.5m/pyatomic.h:12:0,
from /home/alex/Python/include/python3.5m/Python.h:53,
from build/src.linux-x86_64-3.5/yt/utilities/lib/geometry_utils.c:4:
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:40:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic _Bool atomic_bool;
^
I'm not sure that Include/pyatomic.h should be included by the main Include/Python.h header. We already skipped Include/pyatomic.h on C++ because this header is incompatible with C++. |