COMBINE lab

Popular repositories Loading

  1. 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

    C++ 876 184

  2. 🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

    Rust 203 20

  3. An efficient index for the colored, compacted, de Bruijn graph

    C 111 22

  4. long read RNA-seq quantification

    Rust 108 8

  5. Building the compacted de Bruijn graph efficiently from references or reads.

    C++ 91 12

  6. Rapid sensitive and accurate read mapping via quasi-mapping

    C++ 90 23