COMBINE lab
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
C++ 876 184
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
Rust 203 20
An efficient index for the colored, compacted, de Bruijn graph
C 111 22
long read RNA-seq quantification
Rust 108 8
Building the compacted de Bruijn graph efficiently from references or reads.
C++ 91 12
Rapid sensitive and accurate read mapping via quasi-mapping
C++ 90 23