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  1. bioinformatics pipelines for automating various routine tasks like QC, mapping, and differential expression analysis

    Shell 1

  2. scripts for manipulating and analysing RNAseq data

    Python

  3. The script uses BBduk to search for a user-defined sequence in a list of SRA run accessions

    Shell

  4. Forked from kyclark/biofx_python

    Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)

    Python

  5. An alignment-free way to find chimeric reads in a fastq file

    Python