…nalysis (Davidyz#271)

* feat(cli): implement debug mode with coredumpy and viztracer

* chore(cli): exclude debugging.py from coverage

* ci(cli): add debug group to pdm lock

* feat(debugging): Implement cProfile-based profiling for performance analysis

Since viztracer didn't work (gaogaotiantian/viztracer#606), I decided to replace it with cProfile

* chore(dependencies): Remove viztracer from debug dependencies

* fix(cli): lazy import

* feat(debugging): add log directory creation and crash debugging support

* chore(build): revert makefile and ci/cd outdated changes

* chore(dependencies): Add coredumpy to development dependencies

* fix(debugging): Add noqa comment to suppress linting warning

* docs(cli): remove debug dependency from cli help

* fix(cli): make sure to enable `coredumpy` when available.

* tests(cli): Replace `MagicMock` with `Config` so that `debug` won't be truthy

* docs(cli): Add profiling and post-mortem debugging instructions

* ci: Update git auto commit action and ignore main branch

* Auto generate docs

---------

Co-authored-by: Zhe Yu <zcabzyu@ucl.ac.uk>
Co-authored-by: Davidyz <30951234+Davidyz@users.noreply.github.com>

Browse the repository at this point in the history

Browse the repository at this point in the history

Browse the repository at this point in the history

Browse the repository at this point in the history

Browse the repository at this point in the history

* feat(cli): Implement `QueryResult` type.

* refactor(cli): Use in-house `QueryResult` in the query subcommand and the rerankers.

* fix(cli): test coverage.

* make basedpyright happy.

* test coverage

* typo.

* rename parameter

* refactor(cli): make function signatures more consistent.

* fix(cli): safeguard the output processing.

* improve coverage

* tests for `Chunk.export_dict`/`chunks` pipe mode

Browse the repository at this point in the history

…on (Davidyz#264)

* feat(nvim): Add VectorCode integration for Neovim help files

* feat(nvim): use pre_hook to prepare the embeddings.

* feat(nvim): also vectorise help files

* feat(nvim): Add toggleable notifications for vectorising help files

* fix(nvim): make sure to load the custom system prompt

* feat(nvim): Add customisable prompt library for CodeCompanion

* Auto generate docs

* feat(nvim): Improve vectorisation feedback

* fix(nvim): loop require.

* Auto generate docs

* feat(nvim): allow function type for `project_root` and `file_patterns`

* docs(nvim): Vectorise help files notify message

* Auto generate docs

* docs(nvim): Document customisable prompt library for Neovim

* Auto generate docs

* refactor(nvim): move prompt library presets to dedicated module

* Auto generate docs

* feat(nvim): Improve project root and file pattern handling

* update documentations.

* Auto generate docs

Browse the repository at this point in the history

Browse the repository at this point in the history

Browse the repository at this point in the history

Browse the repository at this point in the history

…avidyz#286)

* fix(codecompanion): improve error handling for empty stderr output

- Enhanced flatten_table_to_string to filter out empty error messages
- Added logic to distinguish actual errors from empty stderr output
- Prevents false error reporting when VectorCode operations succeed but have no stderr
- Provides meaningful fallback error message for truly empty error conditions
- Fixes issue where successful operations with empty stderr were reported as { "" } errors

Resolves the confusing empty error message issue in CodeCompanion integration.

* refactor(nvim): cleanup `flatten_table_to_string`

* refactor(nvim): Simplify error handling in `query_tool`

---------

Co-authored-by: Zhe Yu <zcabzyu@ucl.ac.uk>

Browse the repository at this point in the history

Browse the repository at this point in the history

Browse the repository at this point in the history

Browse the repository at this point in the history

Browse the repository at this point in the history

Browse the repository at this point in the history

Browse the repository at this point in the history

Browse the repository at this point in the history

Browse the repository at this point in the history

Browse the repository at this point in the history