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The Jackson Laboratory

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  2. A module with convenience functions for writing Python code that interacts with OMERO.

    Python 46 17

  3. Structural Variants Pipeline for Long Reads

    Perl 44 6

  4. LIkelihood Ratio Interpretation of Clinical AbnormaLities

    Java 40 13

  5. A dataset for loading zarr files to be used in machine learning training pipelines

    Python 35 4

  6. This repository contains course materials from JAX-BD2K workshop.

    Shell 32 6

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Showing 10 of 386 repositories

  • ClintLR Public

    Clinical intuition with likelihood ratios

    TheJacksonLaboratory/ClintLR’s past year of commit activity

    Java

    6

    MIT

    1 2 0

    Updated Apr 9, 2026

  • LIRICAL Public

    LIkelihood Ratio Interpretation of Clinical AbnormaLities

    TheJacksonLaboratory/LIRICAL’s past year of commit activity

    Java

    40 13 9 2

    Updated Apr 9, 2026

  • TheJacksonLaboratory/image-processing-ia’s past year of commit activity

    HTML 0

    127 0 0

    Updated Apr 7, 2026

  • jds-ui-toolkit Public

    The JAX UI Toolkit workspace is a development environment engineered to streamline the creation, testing and deployment of shared UI components and packages across the JAX Data Science ecosystem.

    TheJacksonLaboratory/jds-ui-toolkit’s past year of commit activity

    TypeScript 0 MIT 0

    1 1

    Updated Apr 6, 2026

  • hpo-web Public

    a web application to search and navigate the Human Phenotype Ontology (HPO)

    TheJacksonLaboratory/hpo-web’s past year of commit activity

    HTML

    14 13 9 2

    Updated Apr 3, 2026

  • sennet-demo Public

    Demo notebooks for using SenNet data

    TheJacksonLaboratory/sennet-demo’s past year of commit activity

    Jupyter Notebook

    4

    MIT

    1 0 0

    Updated Mar 26, 2026

  • jds-nf-test Public

    Repository for hosting test data for cs-nf-pipelines

    TheJacksonLaboratory/jds-nf-test’s past year of commit activity

    0 MIT 0

    0 0

    Updated Mar 26, 2026

  • voice-stream-io Public

    VoICE streaming service. Allows multiple input file formats to be streamed to POJOS in a very performant way.

    TheJacksonLaboratory/voice-stream-io’s past year of commit activity

    Java 0 Apache-2.0 0

    1 1

    Updated Mar 24, 2026

  • STQ Public

    Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images

    TheJacksonLaboratory/STQ’s past year of commit activity

    Python

    25

    MIT

    4 2 0

    Updated Mar 23, 2026

  • nf-tenx Public

    All 10x Genomics processing pipelines rolled into one containerized pipelines

    TheJacksonLaboratory/nf-tenx’s past year of commit activity

    Groovy

    8

    MIT

    1 4 1

    Updated Mar 20, 2026