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1. Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

   Python 3.3k 667

2. A fully open source biomolecular structure prediction model based on AlphaFold3

   Python 659 88

3. Protein structure diffusion model for unconditional protein generation and motif scaffolding

   Python 190 33

5. Standardized data set for machine learning of protein structure

   Python 913 138

6. Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."

   Jupyter Notebook 72 22