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Christopher Bare cbare

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@baliga-lab @codeforsystemsbiology

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Hi, I’m J. Christopher Bare. I’m interested in machine learning, natural language processing, healthcare applications, programming languages, and way too many other things.

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  1. Examples and hacks inspired by the book Data Science from Scratch by Joel Grus

    Jupyter Notebook 28 27

  2. Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)

    Python 15 16

  3. A collection of programming problems for learning new languages and practicing coding chops.

    Jupyter Notebook 6

  4. A containerized build of the openSMILE audio feature extractor

    5

  5. A couple small examples of visualization using protovis including a small genome browser. Described in http://digitheadslabnotebook.blogspot.com/2010/03/protovis-data-visualization-in-browser.html

    JavaScript 3

  6. Archive and explore gene-regulatory networks.

    JavaScript 3 3