Church Lab
UniRep model, usage, and examples.
Python 362 96
Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
Jupyter Notebook 61 19
Analysis and figure code from Alley et al. 2019.
Jupyter Notebook 59 19
Genome engineering and analysis software
Python 46 19
Bioinformatics code for paper associated with deep diversification of AAV
Jupyter Notebook 42 17
Analysis for "Comprehensive fitness landscape of AAV capsid reveals a viral gene and enables machine-guided design"
Jupyter Notebook 26 14