FHCRC Computational Biology

deenurp Public
16S rRNA gene sequence curation and phylogenetic reference set creation

fhcrc/deenurp’s past year of commit activity

Python
4
GPL-3.0
3 20 1
Updated Mar 19, 2026
taxtastic Public
Create and maintain phylogenetic "reference packages" of biological sequences.

fhcrc/taxtastic’s past year of commit activity

Python
22
GPL-3.0
13 11 1
Updated Mar 10, 2026
yapp Public
Yet another pplacer pipeline

fhcrc/yapp’s past year of commit activity

Python 0 0
4 2
Updated Jan 7, 2026
mcl Public
Graph clustering by flow simulation

fhcrc/mcl’s past year of commit activity

C
6 2 0 0
Updated Dec 1, 2025
seqmagick Public
An imagemagick-like frontend to Biopython SeqIO

fhcrc/seqmagick’s past year of commit activity

Python
117
GPL-3.0
22 15 1
Updated Mar 18, 2024
nestly Public
Make and use nested directory trees corresponding to combinatorial choices of parameters

fhcrc/nestly’s past year of commit activity

Python
20
MIT
1 5 0
Updated Apr 23, 2017
ampliconnoise Public
A python front end for Chris Quince's AmpliconNoise c code

fhcrc/ampliconnoise’s past year of commit activity

C
5
GPL-3.0 0
1 0
Updated Jul 2, 2015
biopy Public
Automatically exported from code.google.com/p/biopy

fhcrc/biopy’s past year of commit activity

Python
1
0
0 0
Updated Mar 14, 2015
prepdrm Public
Analysis pipeline for identifying low frequency drug resistance mutations (DRMs) in samples from the Partners PrEP study

fhcrc/prepdrm’s past year of commit activity

C 0 GPL-3.0 0
0 0
Updated Jun 30, 2014
mutgen Public
Generate mutations under a motif based mutation model

fhcrc/mutgen’s past year of commit activity

Python
2
GPL-3.0 0
0 0
Updated Jun 19, 2014