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  1. Variational autoencoder for metagenomic binning

    Python 319 49

  2. MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations

    Jupyter Notebook 91 33

  3. Downstream processing of VAMB binning for Viral Elucidation

    Python 54 7

  4. Imputing proteomics data using deep learning models

    Jupyter Notebook 33 3

  5. PlasMAAG is a tool to recover plasmids and organisms from metagenomic samples

    Python 22 2

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Showing 10 of 40 repositories

  • PlasMAAG Public

    PlasMAAG is a tool to recover plasmids and organisms from metagenomic samples

    RasmussenLab/PlasMAAG’s past year of commit activity

    Python

    22

    MIT

    2 4 0

    Updated Mar 16, 2026

  • pimms Public

    Imputing proteomics data using deep learning models

    RasmussenLab/pimms’s past year of commit activity

    Jupyter Notebook

    33

    GPL-3.0

    3 6 1

    Updated Mar 14, 2026

  • DoBSeqWF Public

    Workflow for analysing two-dimensional overlapped pooled sequencing data

    RasmussenLab/DoBSeqWF’s past year of commit activity

    Nextflow

    1

    MIT 0

    0 0

    Updated Mar 9, 2026

  • vamb Public

    Variational autoencoder for metagenomic binning

    RasmussenLab/vamb’s past year of commit activity

    Python

    319

    MIT

    49 48 7

    Updated Feb 23, 2026

  • TaxVamb-Benchmarks Public

    Snakemake workflow for evaluating MAG binning tools with CheckM2 and GUNC quality assessment for the TaxVamb paper

    RasmussenLab/TaxVamb-Benchmarks’s past year of commit activity

    Python

    2

    MIT 0

    0 0

    Updated Feb 23, 2026

  • HAPI Public

    Script to run HAPI (Haplotype-Aware Probabilistic model for Indels) to identify the CCR5delta32 deletion in ancient low coverage dna samples

    RasmussenLab/HAPI’s past year of commit activity

    Python

    2

    MIT

    1 0 0

    Updated Feb 2, 2026

  • taxconverter Public

    Unifies the presentation of taxonomic classifiers output

    RasmussenLab/taxconverter’s past year of commit activity

    Python

    4

    MIT

    1 4 1

    Updated Feb 2, 2026

  • RasmussenLab/git-tutorial’s past year of commit activity

    Python

    1

    BSD-3-Clause

    73 1 0

    Updated Nov 11, 2025

  • njab Public

    Not just another biomarkers: Functionality for biomarker discovery

    RasmussenLab/njab’s past year of commit activity

    Python

    2

    MIT

    1 1 0

    Updated Sep 20, 2025

  • RasmussenLab/VAEs_for_biomedical_data_integration’s past year of commit activity

    Jupyter Notebook

    2

    0

    0 0

    Updated Aug 13, 2025