Znamenskiy lab

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Tools for preprocessing 2p calcium imaging data

Python 3 1
Codes for visual stimulation for depth mapping

C# 2
Padlock design tool modified for running on slurm

Python 2
Utilities for image import, registration, puncta localisation and base-calling for ISS data sets

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Barcoded Rabies In Situ Connectomics

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iss-preprocess Public
Utilities for image import, registration, puncta localisation and base-calling for ISS data sets

znamlab/iss-preprocess’s past year of commit activity

Python
1
MIT 0
16 0
Updated Mar 15, 2026
cottage_analysis Public
Potentially temporary repository to use DLC to track eye position

znamlab/cottage_analysis’s past year of commit activity

Python 0 MIT 0
8 1
Updated Mar 9, 2026
v1_depth_map Public
Analysis code for 2p imaging for 3d vision project

znamlab/v1_depth_map’s past year of commit activity

Jupyter Notebook 0 0
0 0
Updated Feb 24, 2026
brisc Public
Barcoded Rabies In Situ Connectomics

znamlab/brisc’s past year of commit activity

Python
1
MIT 0
0 0
Updated Feb 22, 2026
flexiznam Public
Znam lab tool to interact with flexilims

znamlab/flexiznam’s past year of commit activity

Python 0 MIT 0
13 0
Updated Feb 19, 2026
znamlab/aind-ephys-preprocessing’s past year of commit activity

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2 0 0
Updated Feb 18, 2026
znamlab/ROICaT’s past year of commit activity

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11 0 0
Updated Feb 18, 2026
znamlab/spikeinterface’s past year of commit activity

Python 0 MIT
254 0 0
Updated Feb 13, 2026
znamlab/znamlab.github.io’s past year of commit activity

SCSS 0 MIT
3 0 2
Updated Feb 10, 2026
znamlab/aind-ephys-curation’s past year of commit activity

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5 0 0
Updated Feb 9, 2026