Parallel Computing
Curtis Jensen
cjensen at bioeng.ucsd.edu
Fri Dec 8 16:26:16 EST 2000
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Fri Dec 8 16:26:16 EST 2000
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Konrad Hinsen wrote: > > Curtis Jensen <cjensen at bioeng.ucsd.edu> writes: > > > I haven't had much luck on finding anything about parallel computing via > > Python. Does Python support this? Or do we just need to write a C > > module to run parallel code? Thanks. > > It depends on what you mean exactly by "parallel code", but I suppose > that for most interpretations the answer is that you can do it in > Python using existing modules. > > I'll limit myself to the kind of parallel computing that I do myself, > which is algorithm parallelization implemented via MPI. Version 2.1 of > ScientificPython (available at > ftp://dirac.cnrs-orleans.fr/ScientificPython/) contains an interface > to the most commonly used MPI functions plus the necessary > infrastructure to make Python run as an MPI application, and to permit > C extension modules to use MPI as well without linking to it > (important if you use dynamic libraries). With this package, you can > use MPI in Python in exactly the same way you would do in C or > Fortran. The data objects that can be passed between processes are > NumPy arrays and strings. > > However, most real-life parallel code will also contain C code for > speed; you wouldn't use a parallel machine if speed weren't important. > But you can end up with an efficient program in which most code is > Python. For an example, see the development releases (2.1.x) of the > Molecular Modelling Toolkit (available at > ftp://dirac.cnrs-orleans.fr/MMTK/). > Sorry I suppose I should have been more specific in what I was asking. I was looking for something like what Mr. Hinsen suggested. Though, I am also interested in RPC; I didn't expect to get responces about that. Glad I did. bye the way, the above links are a bit off. I believe they should be: ftp://dirac.cnrs-orleans.fr/pub/ScientificPython/ and ftp://dirac.cnrs-orleans.fr/pub/MMTK/ Thanks. -- Curtis Jensen cjensen at bioeng.ucsd.edu http://www-bioeng.ucsd.edu/~cjensen/ FAX (425) 740-1451
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