RCSB PDB - 1AXC: HUMAN PCNA

 1AXC | pdb_00001axc

HUMAN PCNA




    This is version 1.4 of the entry. See complete history



    Structure of the C-terminal region of p21(WAF1/CIP1) complexed with human PCNA.

    Gulbis, J.M.Kelman, Z.Hurwitz, J.O'Donnell, M.Kuriyan, J.

    (1996) Cell 87: 297-306

    • DOI: https://doi.org/10.1016/s0092-8674(00)81347-1

    • PubMed Abstract: 

      The crystal structure of the human DNA polymerase delta processivity factor PCNA (proliferating cell nuclear antigen) complexed with a 22 residue peptide derived from the C-terminus of the cell-cycle checkpoint protein p21(WAF1/CIP1) has been determined at 2.6 angstrom resolution. p21 binds to PCNA in a 1:1 stoichiometry with an extensive array of interactions that include the formation of a beta sheet with the interdomain connector loop of PCNA. An intact trimeric ring is maintained in the structure of the p21-PCNA complex, with a central hole available for DNA interaction. The ability of p21 to inhibit the action of PCNA is therefore likely to be due to its masking of elements on PCNA that are required for the binding of other components of the polymerase assembly.


    • Organizational Affiliation
      • Laboratory of Molecular Biophysics, The Rockefeller University, New York, New York 10021, USA.

    Macromolecule Content 

    • Total Structure Weight: 94.72 kDa 
    • Atom Count: 6,448 
    • Modeled Residue Count: 804 
    • Deposited Residue Count: 849 
    • Unique protein chains: 2

    Find similar proteins by:

    (by identity cutoff)  |  3D Structure

    Find similar proteins by:  Sequence   |   3D Structure  

    Experimental Data & Validation

    Experimental Data

    • Method: X-RAY DIFFRACTION
    • Resolution: 2.60 Å
    • R-Value Free:  0.289 (Depositor), 0.290 (DCC) 
    • R-Value Work:  0.192 (Depositor), 0.200 (DCC) 
    • R-Value Observed: 0.192 (Depositor) 

    Unit Cell:

    Length ( Å )Angle ( ˚ )
    a = 83.5α = 90
    b = 83.5β = 90
    c = 233.9γ = 120

    Software Package:

    Software NamePurpose
    X-PLORmodel building
    X-PLORrefinement
    X-PLORphasing

    Revision History  (Full details and data files)

    • Version 1.0: 1998-01-28
      Type: Initial release
    • Version 1.1: 2008-03-24
      Changes: Version format compliance
    • Version 1.2: 2011-07-13
      Changes: Version format compliance
    • Version 1.3: 2024-02-07
      Changes: Data collection, Database references, Other
    • Version 1.4: 2024-04-03
      Changes: Refinement description