AnnotationChanger (biojava-legacy 1.9.5 API)

AnnotationChanger (biojava-legacy 1.9.5 API)

java.lang.Object
- org.biojava.utils.AbstractChangeable
- - org.biojava.bio.AbstractAnnotation
  - - org.biojava.bio.AnnotationChanger

All Implemented Interfaces:

Serializable, Annotation, Changeable
```
public class AnnotationChanger
extends AbstractAnnotation
```
AnnotationChanger remaps the values of an Annotation to new values specified by a ValueChanger. This will modify the values associated with properties, but not the property names. For writing light-weigth adaptors to project one type of Annotation to another using a ChangeTable.

Since:

1.3

Author:

Matthew Pocock

See Also:

Serialized Form

Field Summary
- Fields inherited from interface org.biojava.bio.Annotation
  EMPTY_ANNOTATION, PROPERTY

Constructor Summary

Constructors
Constructor	Description
`AnnotationChanger(Annotation wrapped, ChangeTable changer)`	Creates a new `AnnotationChanger` using the specified `ValueChanger` to remap its values.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`ChangeTable`	`getChanger()`	`getMapper` returns the `ValueChanger` being used to remap the `Annotation`.
`Map`	`getProperties()`	`getProperties` returns the mapped contents of the underlying `Annotation` as a `Map`.
`Annotation`	`getWrapped()`	`getWrapped` returns the `Annotation` being remapped.
`boolean`	`propertiesAllocated()`	`propertiesAllocated` is a convenience method to see if we have allocated the properties `Map`.

Methods inherited from class org.biojava.bio.AbstractAnnotation
asMap, containsProperty, equals, getProperty, hashCode, keys, removeProperty, setProperty, toString

Methods inherited from class org.biojava.utils.AbstractChangeable
addChangeListener, addChangeListener, generateChangeSupport, getChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.biojava.utils.Changeable
addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener

- Constructor Detail
  - AnnotationChanger
```
public AnnotationChanger(Annotation wrapped,
                         ChangeTable changer)
```
    Creates a new AnnotationChanger using the specified ValueChanger to remap its values.
    
    Parameters:
    
    wrapped - an Annotation.
    
    changer - a ValueChanger.
- Method Detail
  - getWrapped
```
public Annotation getWrapped()
```
    getWrapped returns the Annotation being remapped.
    
    Returns:
    
    an Annotation.
  - getChanger
```
public ChangeTable getChanger()
```
    getMapper returns the ValueChanger being used to remap the Annotation.
    
    Returns:
    
    a ValueChanger.
  - getProperties
```
public Map getProperties()
```
    getProperties returns the mapped contents of the underlying Annotation as a Map.
    
    Specified by:
    
    getProperties in class AbstractAnnotation
    
    Returns:
    
    a Map.
  - propertiesAllocated
```
public boolean propertiesAllocated()
```
    propertiesAllocated is a convenience method to see if we have allocated the properties Map.
    
    Specified by:
    
    propertiesAllocated in class AbstractAnnotation
    
    Returns:
    
    a boolean true if the properties have been allocated, false otherwise.