ARAlignment (biojava-legacy 1.9.5 API)

ARAlignment (biojava-legacy 1.9.5 API)

All Superinterfaces:

Alignment, Changeable, SymbolList

All Known Implementing Classes:

FlexibleAlignment
```
public interface ARAlignment
extends Alignment
```
ARAlignment is an interface that defines methods for adding and removing seqeunces from an Alignment.

Author:

David Waring

- Nested Class Summary
  - Nested classes/interfaces inherited from interface org.biojava.bio.alignment.Alignment
    Alignment.SymbolListIterator
- Field Summary
  
  Fields
  Modifier and Type Field Description
  
  static ChangeType ADD_LABEL
  
  static ChangeType REMOVE_LABEL
  - Fields inherited from interface org.biojava.bio.alignment.Alignment
    CONTENT
  - Fields inherited from interface org.biojava.bio.symbol.SymbolList
    EDIT, EMPTY_LIST
- Method Summary
  
  All Methods Instance Methods Abstract Methods
  Modifier and Type Method Description
  
  void addSequence(AlignmentElement ae)
  
  void removeSequence(Object label)
  - Methods inherited from interface org.biojava.bio.alignment.Alignment
    getLabels, subAlignment, symbolAt, symbolListForLabel, symbolListIterator
  - Methods inherited from interface org.biojava.utils.Changeable
    addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener
  - Methods inherited from interface org.biojava.bio.symbol.SymbolList
    edit, getAlphabet, iterator, length, seqString, subList, subStr, symbolAt, toList

Field Detail

ADD_LABEL
```
static final ChangeType ADD_LABEL
```

REMOVE_LABEL
```
static final ChangeType REMOVE_LABEL
```

Method Detail

addSequence

void addSequence(AlignmentElement ae)
          throws ChangeVetoException,
                 BioException

Throws:: ChangeVetoException; BioException

removeSequence

void removeSequence(Object label)
             throws ChangeVetoException

Throws:: ChangeVetoException