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SimpleAlignmentElement (biojava-legacy 1.9.5 API)

  • java.lang.Object
    • org.biojava.bio.alignment.SimpleAlignmentElement
  • All Implemented Interfaces:
    AlignmentElement
    public class SimpleAlignmentElement
extends Object
implements AlignmentElement

    SimpleSimpleAlignment is a simple implementation of AlignmentElement.

    Author:
    David Waring

    • Field Summary

      Fields 
      Modifier and Type Field Description
      protected String label  
      protected Location loc  
      protected SymbolList seq  

    • Constructor Summary

      Constructors 
      Constructor Description
      SimpleAlignmentElement​(String label, SymbolList seq, Location loc)  

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      String getLabel()  
      Location getLoc()  
      SymbolList getSymbolList()  
      void setLoc​(Location nLoc)  

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Field Detail

      • label

        protected String label

      • loc

        protected Location loc

      • seq

        protected SymbolList seq

    • Constructor Detail

      • SimpleAlignmentElement

        public SimpleAlignmentElement​(String label,
                              SymbolList seq,
                              Location loc)
                       throws BioException
        Throws:
        BioException

    • Method Detail

      • getLabel

        public String getLabel()
        Specified by:
        getLabel in interface AlignmentElement

      • getLoc

        public Location getLoc()
        Specified by:
        getLoc in interface AlignmentElement

      • getSymbolList

        public SymbolList getSymbolList()
        Specified by:
        getSymbolList in interface AlignmentElement

      • setLoc

        public void setLoc​(Location nLoc)
            throws BioError
        Specified by:
        setLoc in interface AlignmentElement
        Throws:
        BioError