SimpleDistribution (biojava-legacy 1.9.5 API)

Nested Classes
Modifier and Type	Class	Description
`protected class`	`SimpleDistribution.Trainer`	A simple implementation of a trainer for this class.

Field Summary
- Fields inherited from class org.biojava.bio.dist.AbstractDistribution
  nullModelForwarder
- Fields inherited from interface org.biojava.bio.dist.Distribution
  NULL_MODEL, WEIGHTS

Constructors
Constructor	Description
`SimpleDistribution(Distribution dist)`	make an instance of SimpleDistribution with weights identical to the specified Distribution.
`SimpleDistribution(FiniteAlphabet alphabet)`	make an instance of SimpleDistribution for the specified Alphabet.

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`Alphabet`	`getAlphabet()`	The alphabet from which this spectrum emits symbols.
`Distribution`	`getNullModel()`	Retrieve the null model Distribution that this Distribution recognizes.
`double`	`getWeightImpl(AtomicSymbol s)`	Override this method to implement getting the weight for an atomic symbol.
`protected double[]`	`getWeights()`	Get the underlying array that stores the weights.
`protected boolean`	`hasWeights()`	Indicate whether the weights array has been allocated yet.
`void`	`registerWithTrainer(DistributionTrainerContext dtc)`	Register an SimpleDistribution.Trainer instance as the trainer for this distribution.
`protected void`	`setNullModelImpl(Distribution nullModel)`	Implement this to set the null model.
`protected void`	`setWeightImpl(AtomicSymbol s, double w)`	Implement this to actually set the weight.