SimpleModelTrainer (biojava-legacy 1.9.5 API)

SimpleModelTrainer (biojava-legacy 1.9.5 API)

java.lang.Object
- org.biojava.bio.dist.SimpleDistributionTrainerContext
- - org.biojava.bio.dp.SimpleModelTrainer

All Implemented Interfaces:

Serializable, DistributionTrainerContext, ModelTrainer
```
public class SimpleModelTrainer
extends SimpleDistributionTrainerContext
implements ModelTrainer, Serializable
```
Author:

Matthew Pocock, Thomas Down

See Also:

Serialized Form

- Constructor Summary
  
  Constructors
  Constructor Description
  
  SimpleModelTrainer()
- Method Summary
  
  All Methods Instance Methods Concrete Methods
  Modifier and Type Method Description
  
  void registerModel(MarkovModel model)
  Registers an HMM with this trainer.
  - Methods inherited from class org.biojava.bio.dist.SimpleDistributionTrainerContext
    addCount, clearCounts, getCount, getNullModelWeight, getTrainer, registerDistribution, registerTrainer, setNullModelWeight, train
  - Methods inherited from class java.lang.Object
    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
  - Methods inherited from interface org.biojava.bio.dist.DistributionTrainerContext
    addCount, clearCounts, getCount, getNullModelWeight, getTrainer, registerDistribution, registerTrainer, setNullModelWeight, train

- Constructor Detail
  - SimpleModelTrainer
```
public SimpleModelTrainer()
```
- Method Detail
  - registerModel
```
public void registerModel(MarkovModel model)
```
    Registers an HMM with this trainer.
    If the model has been already registered, then this method should do nothing. If it has not been registered, then this method should loop over every state in the model and register the Distribution returned by getWeight.
    
    Specified by:
    
    registerModel in interface ModelTrainer
    
    Parameters:
    
    model - the MarkovModel to train