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TrainingAlgorithm (biojava-legacy 1.9.5 API)

  • All Known Implementing Classes:
    AbstractTrainer, BaumWelchSampler, BaumWelchTrainer
    public interface TrainingAlgorithm
    Author:
    Matthew Pocock, Thomas Down

    • Method Summary

      All Methods Instance Methods Abstract Methods 
      Modifier and Type Method Description
      double getCurrentScore()  
      int getCycle()  
      DP getDP()  
      double getLastScore()  
      void train​(SequenceDB db, double nullWeight, StoppingCriteria stopper)

      Trains the sequences in db untill stopper says to finnish.

    • Method Detail

      • getDP

        DP getDP()

      • getLastScore

        double getLastScore()

      • getCurrentScore

        double getCurrentScore()

      • getCycle

        int getCycle()

      • train

        void train​(SequenceDB db,
           double nullWeight,
           StoppingCriteria stopper)
    throws IllegalSymbolException,
           BioException

        Trains the sequences in db untill stopper says to finnish.

        Throws:
        IllegalSymbolException
        BioException