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BackMatrixPairDPCursor (biojava-legacy 1.9.5 API)

  • java.lang.Object
    • org.biojava.bio.dp.twohead.AbstractMatrixPairDPCursor
      • org.biojava.bio.dp.twohead.BackMatrixPairDPCursor
  • All Implemented Interfaces:
    PairDPCursor
    public class BackMatrixPairDPCursor
extends AbstractMatrixPairDPCursor
    Author:
    Matthew Pocock

    • Field Summary

      • Fields inherited from class org.biojava.bio.dp.twohead.AbstractMatrixPairDPCursor

        bPointers, columns, depth, eCache, emissions, emptyBP, numStates, pos, seqs, sMatrix, zeroCol

    • Constructor Summary

      Constructors 
      Constructor Description
      BackMatrixPairDPCursor​(SymbolList seq1, SymbolList seq2, int depth1, int depth2, PairDPMatrix matrix, EmissionCache eCache)  

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      boolean hasNext()

      test wether the cursor can be advanced further
      void next​(Cell[][] cells)

      retrieve the next block of cells

      • Methods inherited from class org.biojava.bio.dp.twohead.AbstractMatrixPairDPCursor

        getDepth, press

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Constructor Detail

      • BackMatrixPairDPCursor

        public BackMatrixPairDPCursor​(SymbolList seq1,
                              SymbolList seq2,
                              int depth1,
                              int depth2,
                              PairDPMatrix matrix,
                              EmissionCache eCache)
                       throws IllegalSymbolException
        Throws:
        IllegalSymbolException

    • Method Detail

      • hasNext

        public boolean hasNext()

        test wether the cursor can be advanced further

      • next

        public void next​(Cell[][] cells)

        retrieve the next block of cells