Nested Class Summary

• Nested classes/interfaces inherited from interface org.biojava.bio.gui.sequence.SequenceRenderContext

  SequenceRenderContext.Border

Field Summary

• Fields inherited from interface org.biojava.bio.gui.sequence.SequenceRenderContext

  LAYOUT, REPAINT

• Fields inherited from interface javax.swing.SwingConstants

  BOTTOM, CENTER, EAST, HORIZONTAL, LEADING, LEFT, NEXT, NORTH, NORTH_EAST, NORTH_WEST, PREVIOUS, RIGHT, SOUTH, SOUTH_EAST, SOUTH_WEST, TOP, TRAILING, VERTICAL, WEST

Method Summary

• Methods inherited from interface org.biojava.bio.gui.sequence.SequenceRenderContext

  getDirection, getFeatures, getFont, getLeadingBorder, getRange, getScale, getSymbols, getTrailingBorder, graphicsToSequence, graphicsToSequence, sequenceToGraphics

Method Detail

• getSecondaryDirection

  int getSecondaryDirection()

  getSecondaryDirection returns the direction in which the secondary sequence is rendered. This may be either HORIZONTAL or VERTICAL.

  Returns:

  an int.

• getSecondarySymbols

  SymbolList getSecondarySymbols()

  getSecondarySymbols returns the symbols of the secondary sequence.

  Returns:

  a SymbolList.

• getSecondaryFeatures

  FeatureHolder getSecondaryFeatures()

  getSecondaryFeatures returns the features on the secondary sequence.

  Returns:

  a FeatureHolder.

• getSecondaryRange

  RangeLocation getSecondaryRange()

  getSecondaryRange returns the range of the secondary sequence currently rendered.

  Returns:

  a RangeLocation.

• secondarySequenceToGraphics

  double secondarySequenceToGraphics​(int sequencePos)

  secondarySequenceToGraphics converts a sequence coordinate on the secondary sequence to a graphical position.

  Parameters:

  sequencePos - an int.

  Returns:

  a double.

• graphicsToSecondarySequence

  int graphicsToSecondarySequence​(double graphicsPos)

  graphicsToSecondarySequence converts a graphical position to a sequence coordinate on the secondary sequence.

  Parameters:

  graphicsPos - a double.

  Returns:

  an int.

• graphicsToSecondarySequence

  int graphicsToSecondarySequence​(Point point)

  graphicsToSecondarySequence converts a graphical position to a secondary sequence index.

  Parameters:

  point - a Point.

  Returns:

  an int.