DataStore (biojava-legacy 1.9.5 API)

DataStore (biojava-legacy 1.9.5 API)

All Known Implementing Classes:

CompactedDataStore
```
public interface DataStore
```
A repository that can be searched with a sequence.

Author:

Matthew Pocock

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`FiniteAlphabet`	`getAlphabet()`	The alphabet of symbol lists that can be searched against this DataStore.
`void`	`search(String id, SymbolList symList, SearchListener listener)`	Search the DataStore with a symbol list.
`String`	`seqNameForID(int id)`	Resolve an ID to a sequence name.

- Method Detail
  - getAlphabet
```
FiniteAlphabet getAlphabet()
```
    The alphabet of symbol lists that can be searched against this DataStore.
    
    Returns:
    
    a FiniteAlphabet search types of SymbolList
  - search
```
void search(String id,
            SymbolList symList,
            SearchListener listener)
     throws IllegalAlphabetException,
            SearchException
```
    Search the DataStore with a symbol list.
    
    Parameters:
    
    id - the ID to report the symbol list by e.g. 'test' or 'foo1'
    
    symList - the symbol list to search with
    
    listener - the listener to inform of hits
    
    Throws:
    
    IllegalAlphabetException - if the symbol list is of a type that is not compatible with this data store
    
    SearchException
  - seqNameForID
```
String seqNameForID(int id)
             throws IndexOutOfBoundsException,
                    SearchException
```
    Resolve an ID to a sequence name.
    
    Parameters:
    
    id - the int number of the sequence name to resolve
    
    Returns:
    
    the name of that sequence as a String
    
    Throws:
    
    IndexOutOfBoundsException - if id is negative or too large
    
    SearchException