AlignmentStAXHandler (biojava-legacy 1.9.5 API)

AlignmentStAXHandler (biojava-legacy 1.9.5 API)

java.lang.Object
- org.biojava.utils.stax.StAXContentHandlerBase
- - org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler
  - - org.biojava.bio.program.ssbind.AlignmentStAXHandler

All Implemented Interfaces:

StAXContentHandler
```
public class AlignmentStAXHandler
extends SeqSimilarityStAXHandler
```
AlignmentStAXHandler handles the BlastLikeAlignment element of BioJava BlastLike XML.

Since:

1.3

Author:

Keith James

- Field Summary
  
  Fields
  Modifier and Type Field Description
  
  static StAXHandlerFactory ALIGNMENT_HANDLER_FACTORY
  - Fields inherited from class org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler
    ssContext
- Method Summary
  - Methods inherited from class org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler
    addHandler, endElement, handleEndElement, handleStartElement, startElement
  - Methods inherited from class org.biojava.utils.stax.StAXContentHandlerBase
    characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree
  - Methods inherited from class java.lang.Object
    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ALIGNMENT_HANDLER_FACTORY

public static final StAXHandlerFactory ALIGNMENT_HANDLER_FACTORY