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HitStAXHandler (biojava-legacy 1.9.5 API)

  • java.lang.Object
    • org.biojava.utils.stax.StAXContentHandlerBase
      • org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler
        • org.biojava.bio.program.ssbind.HitStAXHandler
  • All Implemented Interfaces:
    StAXContentHandler
    public class HitStAXHandler
extends SeqSimilarityStAXHandler

    AlignmentStAXHandler handles the Hit element of BioJava BlastLike XML.

    Since:
    1.3
    Author:
    Keith James

    • Field Summary

      Fields 
      Modifier and Type Field Description
      static StAXHandlerFactory HIT_HANDLER_FACTORY  

      • Fields inherited from class org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler

        ssContext

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      protected void handleEndElement​(String nsURI, String localName, String qName)  
      protected void handleStartElement​(String nsURI, String localName, String qName, Attributes attrs)  

      • Methods inherited from class org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler

        addHandler, endElement, startElement

      • Methods inherited from class org.biojava.utils.stax.StAXContentHandlerBase

        characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Field Detail

      • HIT_HANDLER_FACTORY

        public static final StAXHandlerFactory HIT_HANDLER_FACTORY

    • Method Detail

      • handleStartElement

        protected void handleStartElement​(String nsURI,
                                  String localName,
                                  String qName,
                                  Attributes attrs)
                           throws SAXException
        Overrides:
        handleStartElement in class SeqSimilarityStAXHandler
        Throws:
        SAXException

      • handleEndElement

        protected void handleEndElement​(String nsURI,
                                String localName,
                                String qName)
                         throws SAXException
        Overrides:
        handleEndElement in class SeqSimilarityStAXHandler
        Throws:
        SAXException