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RegexFieldFinder (biojava-legacy 1.9.5 API)

  • java.lang.Object
    • org.biojava.bio.program.tagvalue.SimpleTagValueWrapper
      • org.biojava.bio.program.tagvalue.RegexFieldFinder
  • All Implemented Interfaces:
    TagValueListener, TagValueWrapper
    public class RegexFieldFinder
extends SimpleTagValueWrapper

    • Constructor Summary

      Constructors 
      Constructor Description
      RegexFieldFinder​(TagValueListener delegate, Pattern pattern, String[] tags, boolean inLine)

      Creates a new RegexFiledFinder.

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void endTag()

      End the current tag.
      void startTag​(Object tag)

      Start a new tag.
      void value​(TagValueContext ctxt, Object val)

      A value has been seen.

      • Methods inherited from class org.biojava.bio.program.tagvalue.SimpleTagValueWrapper

        endRecord, getDelegate, setDelegate, startRecord

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Constructor Detail

      • RegexFieldFinder

        public RegexFieldFinder​(TagValueListener delegate,
                        Pattern pattern,
                        String[] tags,
                        boolean inLine)

        Creates a new RegexFiledFinder.

        Parameters:
        delegate - the TagValueListener to forward events to
        pattern - a Pattern to match to values
        tags - an array of Strings giving tag names for each group in the pattern
        inLine - if false, an entire sub-document will be generated for the parent tag

    • Method Detail

      • startTag

        public void startTag​(Object tag)
              throws ParserException

        Start a new tag.

        Specified by:
        startTag in interface TagValueListener
        Overrides:
        startTag in class SimpleTagValueWrapper
        Parameters:
        tag - the Object representing the new tag
        Throws:
        ParserException - if the tag could not be started

      • endTag

        public void endTag()
            throws ParserException

        End the current tag.

        Specified by:
        endTag in interface TagValueListener
        Overrides:
        endTag in class SimpleTagValueWrapper
        Throws:
        ParserException - if the tag could not be ended

      • value

        public void value​(TagValueContext ctxt,
                  Object val)
           throws ParserException

        A value has been seen.

        Specified by:
        value in interface TagValueListener
        Overrides:
        value in class SimpleTagValueWrapper
        Parameters:
        ctxt - a TagValueContext that could be used to push a sub-document
        val - the value Object observed
        Throws:
        ParserException - if the value could not be processed