CircularView (biojava-legacy 1.9.5 API)
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Nested Class Summary
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Nested classes/interfaces inherited from interface org.biojava.bio.Annotatable
Annotatable.AnnotationForwarder
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Nested classes/interfaces inherited from interface org.biojava.bio.seq.FeatureHolder
FeatureHolder.EmptyFeatureHolder
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Field Summary
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Fields inherited from interface org.biojava.bio.Annotatable
ANNOTATION
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Fields inherited from interface org.biojava.bio.seq.FeatureHolder
EMPTY_FEATURE_HOLDER, FEATURES, SCHEMA
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Fields inherited from interface org.biojava.bio.symbol.SymbolList
EDIT, EMPTY_LIST
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Constructor Summary
Constructors Constructor Description CircularView(Sequence seq)CircularView(Sequence seq, FeatureRealizer fr)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description FeaturecreateFeature(Feature.Template template)Over rides ViewSequence to allow the use of locations that have coordinates outside of the sequence length (which are needed to describe locations that overlap the origin of a circular sequence).
SymbolListsubList(int start, int end)Over rides ViewSequence.
StringsubStr(int start, int end)Over rides ViewSequence.
SymbolsymbolAt(int index)Over rides ViewSequence.
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Methods inherited from class org.biojava.bio.seq.impl.ViewSequence
containsFeature, countFeatures, edit, features, filter, filter, getAddedFeatures, getAlphabet, getAnnotation, getName, getSchema, getURN, iterator, length, realizeFeature, removeFeature, seqString, toList
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Methods inherited from class org.biojava.utils.Unchangeable
addChangeListener, addChangeListener, addForwarder, getForwarders, getListeners, isUnchanging, removeChangeListener, removeChangeListener, removeForwarder
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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Methods inherited from interface org.biojava.utils.Changeable
addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener
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