StrandedFeature (biojava-legacy 1.9.5 API)
-
-
Nested Class Summary
Nested Classes Modifier and Type Interface Description static classStrandedFeature.StrandClass to represent the 'strandedness' of a feature.
static classStrandedFeature.TemplateTemplate class for parameterizing the creation of a new
StrandedFeature.-
Nested classes/interfaces inherited from interface org.biojava.bio.Annotatable
Annotatable.AnnotationForwarder
-
Nested classes/interfaces inherited from interface org.biojava.bio.seq.Feature
Feature.ByLocationComparator
-
Nested classes/interfaces inherited from interface org.biojava.bio.seq.FeatureHolder
FeatureHolder.EmptyFeatureHolder
-
-
Field Summary
Fields Modifier and Type Field Description static StrandedFeature.StrandNEGATIVEFlag to indicate that a feature is on the negative strand.
static StrandedFeature.StrandPOSITIVEFlag to indicate that a feature is on the positive strand.
static ChangeTypeSTRANDThe strand of this feature is being altered.
static StrandedFeature.StrandUNKNOWNFlag to indicate that a feature has an unknown strand.
-
Fields inherited from interface org.biojava.bio.Annotatable
ANNOTATION
-
Fields inherited from interface org.biojava.bio.seq.Feature
byLocationOrder, LOCATION, PROPERTY_DATA_KEY, SOURCE, SOURCETERM, TYPE, TYPETERM
-
Fields inherited from interface org.biojava.bio.seq.FeatureHolder
EMPTY_FEATURE_HOLDER, FEATURES, SCHEMA
-
-
Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description StrandedFeature.StrandgetStrand()Retrieve the strand that this feature lies upon.
SymbolListgetSymbols()Return a list of symbols that are contained in this feature.
voidsetStrand(StrandedFeature.Strand strand)Set the strand that this feature lies upon.
-
Methods inherited from interface org.biojava.bio.Annotatable
getAnnotation
-
Methods inherited from interface org.biojava.utils.Changeable
addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener
-
Methods inherited from interface org.biojava.bio.seq.Feature
features, getLocation, getParent, getSequence, getSource, getSourceTerm, getType, getTypeTerm, makeTemplate, setLocation, setSource, setSourceTerm, setType, setTypeTerm
-
Methods inherited from interface org.biojava.bio.seq.FeatureHolder
containsFeature, countFeatures, createFeature, filter, filter, getSchema, removeFeature
-
-