RevCompSequence (biojava-legacy 1.9.5 API)

Nested Class Summary
- Nested classes/interfaces inherited from interface org.biojava.bio.Annotatable
  Annotatable.AnnotationForwarder
- Nested classes/interfaces inherited from interface org.biojava.bio.seq.FeatureHolder
  FeatureHolder.EmptyFeatureHolder

Fields
Modifier and Type	Field	Description
`protected Sequence`	`origSeq`

Constructors
Constructor	Description
`RevCompSequence(Sequence seq)`	URN, Name and Annotation are copied as is from the original Sequence, unless you use the the other contructor that sets these.
`RevCompSequence(Sequence seq, String urn, String name, Annotation annotation)`

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`Object`	`clone()`	clone() should make a complete copy of the Sequence with all features (and children) and return a SimpleSequence that is unconnected from the original sequence.
`boolean`	`containsFeature(Feature f)`	containsFeature() will return true if this seq contains the feature in question, or if if the original (non reverse complement) sequence contains the feature;
`int`	`countFeatures()`	Count how many features are contained.
`Feature`	`createFeature(Feature.Template ft)`	createFeature() will call createFeature() on the underlying Sequence.
`void`	`edit(Edit e)`	edit() will try to edit the underlying Sequence.
`Iterator`	`features()`	Iterate over the features in no well defined order.
`FeatureHolder`	`filter(FeatureFilter ff)`	Query this set of features using a supplied `FeatureFilter`.
`FeatureHolder`	`filter(FeatureFilter ff, boolean recurse)`	Return a new FeatureHolder that contains all of the children of this one that passed the filter fc.
`Feature`	`getFeatureFromOriginal(Feature f)`	getFeatureFromOriginal() Since you can not create a feature on a projectedFeature at this time, I am including this method so that you can get the corresponding feature from the original sequence.
`void`	`removeFeature(Feature f)`	Remove a feature attached to this sequence.