SimpleSequenceFactory (biojava-legacy 1.9.5 API)

SimpleSequenceFactory (biojava-legacy 1.9.5 API)

java.lang.Object
- org.biojava.bio.seq.impl.SimpleSequenceFactory

All Implemented Interfaces:

Serializable, SequenceFactory
```
public class SimpleSequenceFactory
extends Object
implements SequenceFactory, Serializable
```
A no-frills implementation of SequenceFactory that produces SimpleSequence objects.

Author:

Matthew Pocock, Thomas Down

See Also:

Serialized Form

Constructor Summary

Constructors
Constructor Description

SimpleSequenceFactory()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`Sequence`	`createSequence(SymbolList symList, String uri, String name, Annotation annotation)`	Creates a sequence using these parameters.
`FeatureRealizer`	`getFeatureRealizer()`	Returns the FeatureRealizer set by "setFeatureRealizer".
`void`	`setFeatureRealizer(FeatureRealizer fr)`	Set the FeatureRealizer used by new sequences created by this factory.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - SimpleSequenceFactory
```
public SimpleSequenceFactory()
```
- Method Detail
  - getFeatureRealizer
```
public FeatureRealizer getFeatureRealizer()
```
    Returns the FeatureRealizer set by "setFeatureRealizer".
  - setFeatureRealizer
```
public void setFeatureRealizer(FeatureRealizer fr)
```
    Set the FeatureRealizer used by new sequences created by this factory.
  - createSequence
```
public Sequence createSequence(SymbolList symList,
                               String uri,
                               String name,
                               Annotation annotation)
```
    Creates a sequence using these parameters.
    
    Specified by:
    
    createSequence in interface SequenceFactory
    
    Parameters:
    
    symList - the SymbolList defining the 'sequence'
    
    uri - the uri of the sequence. This will be returned by the getURN() method on Sequence.
    
    name - the name
    
    annotation - a hint for the annotation of the resulting sequence
    
    Returns:
    
    a new Sequence object