SimpleGappedSymbolList.Block (biojava-legacy 1.9.5 API)

SimpleGappedSymbolList.Block (biojava-legacy 1.9.5 API)

java.lang.Object
- org.biojava.bio.symbol.SimpleGappedSymbolList.Block

All Implemented Interfaces:

Serializable

Enclosing class:

SimpleGappedSymbolList
```
protected static final class SimpleGappedSymbolList.Block
extends Object
implements Serializable
```
An aligned block.
The alignment is actualy stoored as a list of these objects. Each block is contiguous with the next in the source fields, but may be gapped in the view fields.

Author:

Matthew Pocock

See Also:

Serialized Form

- Field Summary
  
  Fields
  Modifier and Type Field Description
  
  int sourceEnd
  
  int sourceStart
  
  int viewEnd
  
  int viewStart
- Constructor Summary
  
  Constructors
  Constructor Description
  
  Block(int sourceStart, int sourceEnd, int viewStart, int viewEnd)
  
  Block(SimpleGappedSymbolList.Block block)
- Method Summary
  
  All Methods Instance Methods Concrete Methods
  Modifier and Type Method Description
  
  boolean isSane()
  
  String toString()
  - Methods inherited from class java.lang.Object
    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

sourceStart
```
public int sourceStart
```

sourceEnd
```
public int sourceEnd
```

viewStart
```
public int viewStart
```

viewEnd
```
public int viewEnd
```

Constructor Detail

Block

public Block(SimpleGappedSymbolList.Block block)

Block

public Block(int sourceStart,
             int sourceEnd,
             int viewStart,
             int viewEnd)

Method Detail
- isSane
```
public boolean isSane()
```
- toString
```
public String toString()
```
  Overrides:
  
  toString in class Object