Histone H2B type 1-C

From Wikipedia, the free encyclopedia

H2BC4
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

5KGF

Identifiers
AliasesH2BC4, H2B.1, H2B/l, H2BFL, dJ221C16.3, Histone H2B type 1-C, histone cluster 1, H2bc, histone cluster 1 H2B family member c, H2B clustered histone 4, HIST1H2BC, H2BC10, H2BC8, H2BC7, H2BC6
External IDsOMIM: 602847; MGI: 2448386; HomoloGene: 136774; GeneCards: H2BC4; OMA:H2BC4 - orthologs
Gene location (Human)
Chromosome 6 (human)
Chr.Chromosome 6 (human)[1]

Chromosome 6 (human)

Genomic location for H2BC4

Genomic location for H2BC4

Band6p22.2Start26,114,873 bp[1]
End26,123,926 bp[1]
Gene location (Mouse)
Chromosome 13 (mouse)
Chr.Chromosome 13 (mouse)[2]

Chromosome 13 (mouse)

Genomic location for H2BC4

Genomic location for H2BC4

Band13|13 A3.1Start23,755,570 bp[2]
End23,756,187 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • Achilles tendon

  • epithelium of colon

  • testicle

  • monocyte

  • blood

  • bone marrow cell

  • gonad

  • gastrocnemius muscle

  • sural nerve

  • sperm
Top expressed in
  • uterus

  • genital tubercle

  • granulocyte

  • yolk sac

  • tail of embryo

  • embryo

  • embryo

  • spermatocyte

  • thymus

  • stomach
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

8347

319181

Ensembl

ENSG00000180596

ENSMUSG00000058385

UniProt

P62807

Q6ZWY9

RefSeq (mRNA)

NM_003526
NM_001381989

NM_178196

RefSeq (protein)

NP_003517
NP_001368918

NP_001171124
NP_001277459
NP_835501
NP_835503
NP_001277309

NP_075911

Location (UCSC)Chr 6: 26.11 – 26.12 MbChr 13: 23.76 – 23.76 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Histone H2B type 1-C/E/F/G/I is a protein that in humans is encoded by the HIST1H2BC gene.[5][6][7]

Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is intronless and encodes a member of the histone H2B family. Transcripts from this gene lack polyA tails but instead contain a palindromic termination element. This gene is found in the large histone gene cluster on chromosome 6.[7]

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000180596Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000058385Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Albig W, Kioschis P, Poustka A, Meergans K, Doenecke D (Apr 1997). "Human histone gene organization: nonregular arrangement within a large cluster". Genomics. 40 (2): 314–22. doi:10.1006/geno.1996.4592. PMID 9119399.
  6. ^ Marzluff WF, Gongidi P, Woods KR, Jin J, Maltais LJ (Oct 2002). "The human and mouse replication-dependent histone genes". Genomics. 80 (5): 487–98. doi:10.1016/S0888-7543(02)96850-3. PMID 12408966.
  7. ^ a b "Entrez Gene: HIST1H2BC histone cluster 1, H2bc".
  • PDBe-KB provides an overview of all the structure information available in the PDB for Human Histone H2B type 1-C