GitHub - HKU-MedAI/PAM: [TMI'24] Histopathology Whole Slide Image Analysis with Heterogeneous Graph Representation Learning

PAM

Unleash the Power of State Space Model for Whole Slide Image with Local Aware Scanning and Importance Resampling

Model Structure

Hierarchical Feature Extraction

# Create regions with resolution of 4096x4096
python create_patches_fp.py

# Extract feature for regions (4096x4096) and patches (512x512)
python extract_features_fp.py

Training

bash scripts/train_pam.sh

Acknowledgements

The project was built on top of amazing repositories such as CLAM, VMamba. We thank the authors and developers for their contribution.