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  1. A tool for semi-automatic cell type classification

    Python 458 57

  2. A tool for semi-automatic cell type harmonization and integration

    Python 118 16

  3. Gene group activity utility functions for Scanpy

    Jupyter Notebook 100 4

  4. Join subcellular Visium HD bins into cells

    Python 138 13

  5. Aligning gene expression trajectories of single-cell reference and query systems

    Jupyter Notebook 83 13

  6. Inference of TCR motifs

    Jupyter Notebook 32 3

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Showing 10 of 77 repositories

  • celltypist Public

    A tool for semi-automatic cell type classification

    Teichlab/celltypist’s past year of commit activity

    Python

    458

    MIT

    57 44 2

    Updated Mar 11, 2026

  • nichefinder Public

    Quantify spatial proximity patterns of cell types

    Teichlab/nichefinder’s past year of commit activity

    Jupyter Notebook

    1

    BSD-3-Clause 0

    0 0

    Updated Mar 9, 2026

  • cellhint Public

    A tool for semi-automatic cell type harmonization and integration

    Teichlab/cellhint’s past year of commit activity

    Python

    118

    MIT

    16 6 0

    Updated Mar 9, 2026

  • cell2home Public

    Analyse cell homing and migration in single-cell datasets

    Teichlab/cell2home’s past year of commit activity

    Python 0 MIT 0

    0 0

    Updated Mar 9, 2026

  • csd3-scripts Public

    Various utility scripts for CSD3 survival

    Teichlab/csd3-scripts’s past year of commit activity

    Python

    1

    0

    0 0

    Updated Feb 27, 2026

  • Teichlab/celcomen’s past year of commit activity

    Jupyter Notebook

    21

    GPL-3.0

    1 0 0

    Updated Feb 25, 2026

  • Teichlab/crohns-fibroblast-atlas’s past year of commit activity

    Jupyter Notebook

    1

    MIT

    1 0 0

    Updated Feb 20, 2026

  • gene2probe Public

    Pipeline for designing custom probes against human genes

    Teichlab/gene2probe’s past year of commit activity

    Jupyter Notebook

    21

    MIT

    7 0 1

    Updated Jan 30, 2026

  • Teichlab/sctk’s past year of commit activity

    Python

    46

    GPL-3.0

    8 1 1

    Updated Jan 28, 2026

  • ega-meta-harvest Public

    Gather EGAF-EGAN-EGAX metadata for EGA data released from Sanger

    Teichlab/ega-meta-harvest’s past year of commit activity

    Python 0 0

    0 0

    Updated Jan 28, 2026

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