Yosef Lab

@YosefLab

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  1. Signature Analysis and Visualization for Single-Cell RNA-seq

    R 177 33

  2. A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

    Python 99 29

  3. In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

    Python 124 33

  4. Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility

    Python 10 5

Repositories

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Showing 10 of 69 repositories

  • scib-metrics Public

    Accelerated, Python-only, single-cell integration benchmarking metrics

    YosefLab/scib-metrics’s past year of commit activity

    Python

    90

    BSD-3-Clause

    21 7 3

    Updated Apr 9, 2026

  • destvi_utils Public

    Utilities for downstream analysis of destVI

    YosefLab/destvi_utils’s past year of commit activity

    Python 0 BSD-3-Clause 0

    1 1

    Updated Apr 6, 2026

  • YosefLab/treedata’s past year of commit activity

    Python

    9

    BSD-3-Clause

    4 0 1

    Updated Apr 6, 2026

  • YosefLab/popV’s past year of commit activity

    Python

    92

    MIT

    20 3 2

    Updated Apr 6, 2026

  • YosefLab/cytovi-reproducibility’s past year of commit activity

    Jupyter Notebook

    1 2 0 0

    Updated Apr 1, 2026

  • Harreman Public

    Harreman infers metabolic exchanges in tissues using spatial transcriptomics.

    YosefLab/Harreman’s past year of commit activity

    Python

    7

    BSD-3-Clause

    1 0 0

    Updated Mar 30, 2026

  • visionpy Public

    Functional interpretation of single cell similarity maps

    YosefLab/visionpy’s past year of commit activity

    JavaScript

    5

    BSD-3-Clause

    4 0 3

    Updated Mar 30, 2026

  • pycea Public

    scverse lineage tracing analysis toolkit

    YosefLab/pycea’s past year of commit activity

    Python

    4

    BSD-3-Clause

    2 0 0

    Updated Mar 30, 2026

  • YosefLab/yoseflab.github.io’s past year of commit activity

    JavaScript

    3

    MIT

    9 0 0

    Updated Mar 30, 2026

  • YosefLab/Hotspot’s past year of commit activity

    Python

    147

    MIT

    17 20 0

    Updated Mar 20, 2026

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