Yosef Lab

@YosefLab

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Signature Analysis and Visualization for Single-Cell RNA-seq

R 177 33
A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

Python 99 29
In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

Python 124 33
Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility

Python 10 5

Showing 10 of 69 repositories

scib-metrics Public
Accelerated, Python-only, single-cell integration benchmarking metrics

YosefLab/scib-metrics’s past year of commit activity

Python
90
BSD-3-Clause
21 7 3
Updated Apr 9, 2026
destvi_utils Public
Utilities for downstream analysis of destVI

YosefLab/destvi_utils’s past year of commit activity

Python 0 BSD-3-Clause 0
1 1
Updated Apr 6, 2026
YosefLab/treedata’s past year of commit activity

Python
9
BSD-3-Clause
4 0 1
Updated Apr 6, 2026
YosefLab/popV’s past year of commit activity

Python
92
MIT
20 3 2
Updated Apr 6, 2026
YosefLab/cytovi-reproducibility’s past year of commit activity

Jupyter Notebook
1 2 0 0
Updated Apr 1, 2026
Harreman Public
Harreman infers metabolic exchanges in tissues using spatial transcriptomics.

YosefLab/Harreman’s past year of commit activity

Python
7
BSD-3-Clause
1 0 0
Updated Mar 30, 2026
visionpy Public
Functional interpretation of single cell similarity maps

YosefLab/visionpy’s past year of commit activity

JavaScript
5
BSD-3-Clause
4 0 3
Updated Mar 30, 2026
pycea Public
scverse lineage tracing analysis toolkit

YosefLab/pycea’s past year of commit activity

Python
4
BSD-3-Clause
2 0 0
Updated Mar 30, 2026
YosefLab/yoseflab.github.io’s past year of commit activity

JavaScript
3
MIT
9 0 0
Updated Mar 30, 2026
YosefLab/Hotspot’s past year of commit activity

Python
147
MIT
17 20 0
Updated Mar 20, 2026

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