GitHub - ariankh/Sequence: This project implements an advanced DNA editing tool inspired by Vim keybindings, designed for bioinformaticians and researchers working with genomic data. It provides a powerful command-line interface for DNA sequence manipulation, analysis, and visualization.

File: README.md

DNA Editor

This project implements an advanced DNA editing tool inspired by Vim keybindings, designed for bioinformaticians and researchers working with genomic data. It provides a powerful command-line interface for DNA sequence manipulation, analysis, and visualization.

Features

Vim-like modal editing (Normal, Insert, and Visual modes)
Advanced DNA manipulation operations (insert, delete, replace, change)
CRISPR-Cas9 editing simulation with NHEJ
Transcription and translation functions
GC content calculation with sliding window analysis
One-hot encoding for ML applications
Undo/Redo functionality
Advanced recombination simulation
Mutation introduction with various mutation types
Sequence alignment
Visualization of GC content
File I/O for FASTA format
Sequence annotation
Mutation analysis

Installation

Clone this repository:

git clone https://github.com/ariankh/sequence.git

Navigate to the project directory:
Install the required dependencies:
```
pip install -r requirements.txt
```

Usage

Run the main script to start the DNA editor:

Enter commands as prompted. Type 'help' for a list of available commands.

Contributing

Contributions are welcome! Please feel