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Center for Microbial Communities, Aalborg University, DK

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  1. Wiki of the Microflora Danica project

    8 1

  2. Metadata cleaning and report making for the Microflora Danica project

    R 5 2

  3. Toolkit for establishing, updating, and validating GTDB fungal species clusters

    Python 3

  4. Test an Illumina MiSEQ run for cross-talk and sample bleedover

    Shell 1 1

  5. Snakemake workflow to process 16S nanopore amplicon sequences (of any length) and produce an abundance table including taxonomy

    Python

  6. Practice using git(hub)

    4

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Showing 10 of 29 repositories

  • biocloud-docs Public

    Documentation website for our HPC cluster (and the likes)

    cmc-aau/biocloud-docs’s past year of commit activity

    0 Apache-2.0

    1 0 1

    Updated Mar 3, 2026

  • mfd_metadata Public

    Metadata cleaning and report making for the Microflora Danica project

    cmc-aau/mfd_metadata’s past year of commit activity

    R

    5

    GPL-3.0

    2 2 0

    Updated Feb 23, 2026

  • cmc-aau/snakemake_project_template’s past year of commit activity

    Python 0 MIT

    1 0 0

    Updated Feb 21, 2026

  • cmc-aau/alphafold_singularity’s past year of commit activity

    Python 0 GPL-3.0

    13 0 0

    Updated Dec 4, 2025

  • cmc-aau/gtdb_species_clusters-fungi’s past year of commit activity

    Python

    3

    GPL-3.0 0

    0 0

    Updated Dec 3, 2025

  • cmc-aau/jobperf’s past year of commit activity

    Go 0 GPL-2.0

    6 0 1

    Updated Nov 19, 2025

  • biocloud-software Public

    Repo for all sorts of software, mainly modules or containers

    cmc-aau/biocloud-software’s past year of commit activity

    Shell 0 GPL-3.0 0

    0 0

    Updated Nov 14, 2025

  • mfd_wiki Public

    Wiki of the Microflora Danica project

    cmc-aau/mfd_wiki’s past year of commit activity

    8

    GPL-3.0

    1 0 0

    Updated Oct 6, 2025

  • mfd_sr_mags Public

    Repository for phylogenetic overview of short-read MAGs from the Microflora Danica project

    cmc-aau/mfd_sr_mags’s past year of commit activity

    0 GPL-3.0

    1 0 0

    Updated Sep 4, 2025

  • nanopore_16Samp Public

    Snakemake workflow to process 16S nanopore amplicon sequences (of any length) and produce an abundance table including taxonomy

    cmc-aau/nanopore_16Samp’s past year of commit activity

    Python 0 GPL-3.0 0

    0 0

    Updated Jun 5, 2025

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