Installation
pip install pycortex
pip install nibabel
pip install h5py
git clone https://github.com/Washington-University/HCPpipelines.git
Freesurfer must be installed to run mri_convert.
Usage
Download NSD fsaverage betas.
- Convert mgh to gii
python example_mgh_to_fsaverage.py --nsd_dir /path/to/nsddata_betas/ppdata/ --output_dir /path/to/gii/output/ --subids 1
- Convert gii to fsLR
python example_fsaverage_to_fsLR32k.py --fs_dir /path/to/gii/output/ --output_dir /path/to/fsLR/output/ --subids 1
- Convert fsLR to cortex image
python example_cortex_to_image.py --output_dir /path/to/cortex/output/ --subids 1 --data_dir /path/to/fsLR/output/