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Devon Ryan dpryan79

Neuroscientist/ion channel biophysicist turned bioinformatician.

  • Genedata AG

  • Basel, Switzerland / Freiburg, Germany

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  1. Tools to process and analyze deep sequencing data.

    Python 752 220

  2. This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

    246 59

  3. A python extension for quick access to bigWig and bigBed files

    C 240 54

  4. A C library for handling bigWig files

    C 81 25

  5. A (mostly) universal methylation extractor for BS-seq experiments.

    C 176 46

  6. Bisulfite alignment on nodes of a cluster

    C 9 2