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Hi, I'm Avinash

Computational biologist working at the intersection of genomics and software.

Languages: Python, R, C/C++

Projects

  • castools — command line tools for the CAS project
  • regtools — integrate DNA-seq and RNA-seq data to identify regulatory mutations
  • maury — R package to detect sample-swaps in NGS data
  • arnav — mutation calling using a site-specific binomial model
  • bam-parser-tutorial — parsing BAM files using htslib
  • mpileup2readcounts — per-nucleotide read counts from samtools mpileup

Links

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  2. Forked from griffithlab/regtools

    Tools that integrate DNA-seq and RNA-seq data to help identify mutations that have a regulatory effect.

    C++

  3. An R package to detect sample-swaps in Next Generation Sequencing(NGS) data.

    R 2

  4. Mutation calling using a site-specific binomial model

    C 1

  5. A simple example of parsing BAM files using htslib

    C 12 2

  6. Get per-nucleotide readcounts from samtools mpileup

    C++ 5 6