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1. VarFish: comprehensive DNA variant analysis for diagnostics and research

   Python 52 12

2. SeqAn's official repository.

   C++ 500 173

3. Annotation of VCF variants with functional impact and from databases (executable+library)

   Java 65 33

4. Python 3 library with good support for both reading and writing VCF

   Python 111 24

5. Simple matching of HTS samples based on HLA typing

   Python 14 2

6. 🎉 CNVetti – robust, efficient, and versatile clinical CNV calling from HTS data

   Rust 9