John Huddleston huddlej

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1. Scripts. config, and snakefiles for seasonal-flu nextstrain builds

   Python 59 29

2. Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution

   Jupyter Notebook 7 2

3. Long-term forecasts for pathogen populations

   Python 1

4. Pipeline components for real-time phylodynamic analysis

   Python 276 136

5. Create reduced dimension embeddings for pathogen sequences

   Python 1

6. Nextstrain build for SARS-CoV-2

   Python 1.4k 409