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Official code repository for GATK versions 4 and up
Java 1.9k 624
A Java API for high-throughput sequencing data (HTS) formats.
Java 297 242
Command line argument parser and online documentation generation utilities for java command line programs.
Java 11 6
CLI for interacting with Cromwell servers
Python 54 15
A library for manipulating bioinformatics sequencing formats in Apache Spark
Java 32 12