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Open Microscopy Environment

Maintenance Open Source? Yes!

OME   says 👋

OME is a consortium of universities, research labs, industry and developers producing open-source software and format standards for microscopy data. If you are working with bioimaging data like these:

then you may already be using something from OME! (You can find out more about these images on https://idr.openmicroscopy.org.)

Projects you may be interested in:

Find more ways to get started under https://www.openmicroscopy.org/explore!

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  1. OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities,…

    Java 216 104

  2. Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Pub…

    Java 415 253

  3. Examples of usage of the Bio-Formats API

    Java 13 19

  4. Examples playbooks for installing OMERO with Ansible and Docker

    11 12

  5. Gradle project containing insight java client for OMERO

    Java 9 13

  6. An OMERO.web app for creating Figures from images in OMERO

    JavaScript 20 37

Repositories

Showing 10 of 347 repositories

  • ome/ansible-role-omero-searchengine’s past year of commit activity

    Python 0

    1 1 1

    Updated Mar 17, 2026

  • ome/EMBL-EBI-imaging-course-03-2026’s past year of commit activity

    Jupyter Notebook 0 BSD-2-Clause

    1 0 0

    Updated Mar 17, 2026

  • ome/omero_search_engine’s past year of commit activity

    Python

    2

    GPL-2.0

    5 20 9

    Updated Mar 17, 2026

  • ome/bio-formats-documentation’s past year of commit activity

    Java

    9

    BSD-2-Clause

    19 2 2

    Updated Mar 17, 2026

  • ome/ansible-role-omero-ms-image-region’s past year of commit activity

    Jinja 0

    4 0 0

    Updated Mar 17, 2026

  • ome/napari-ome-zarr’s past year of commit activity

    Python

    46

    BSD-3-Clause

    23 30 5

    Updated Mar 17, 2026

  • bioformats Public

    Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

    ome/bioformats’s past year of commit activity

  • status Public

    Status dashboard for the OME project

    ome/status’s past year of commit activity

  • upptime Public

    📈 Uptime monitor and status page for OME, powered by @upptime

    ome/upptime’s past year of commit activity

    Markdown

    1

    MIT

    1 1 1

    Updated Mar 16, 2026

  • ome/omero-cli-server’s past year of commit activity

    Python

    1

    GPL-2.0

    3 0 4

    Updated Mar 16, 2026