Pinned Loading

1. Download and index Ensembl sequences and annotations, remove non-canonical chromosimes, remove low TSL, index with multiple tools

   Python 1

2. Align reads over a reference genome, filter aligned-reads, and mark duplicates

   Python

3. Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2

   Python 1 1

4. Snakemake workflow used to call peaks with Macs2

   Python

5. Perform basic QC over sequenced data

   Python

6. Snakemake workflow designed to perform RNASeq transcrpotime expression estimation with Salmon

   Python