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  1. https://www.sc-best-practices.org

    Jupyter Notebook 1.2k 257

  2. RNA Velocity generalized through dynamical modeling

    Python 491 111

  3. Reference mapping for single-cell genomics

    Jupyter Notebook 399 70

  4. Benchmarking analysis of data integration tools

    Python 408 75

  5. Electronic Health Record Analysis with Python.

    Python 331 41

Repositories

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Showing 10 of 252 repositories

  • ehrapy Public

    Electronic Health Record Analysis with Python.

    theislab/ehrapy’s past year of commit activity

  • gh-dashboard Public

    A dashboard of everything in the theislab GitHub repository

    theislab/gh-dashboard’s past year of commit activity

    HTML

    8

    0

    1 0

    Updated Mar 5, 2026

  • theislab/single-cell-best-practices’s past year of commit activity

  • scConcept Public

    Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction

    theislab/scConcept’s past year of commit activity

    Python

    23

    MIT

    4 0 0

    Updated Mar 4, 2026

  • theislab/lamin_dataloader’s past year of commit activity

    Python 0

    1 0 0

    Updated Mar 4, 2026

  • theislab/huCIRA’s past year of commit activity

    Python

    32

    MIT

    3 3 1

    Updated Mar 4, 2026

  • DRVI Public

    Unsupervised Deep Disentangled Representation of Single-Cell Omics

    theislab/DRVI’s past year of commit activity

    Python

    59

    BSD-3-Clause

    6 4 5

    Updated Mar 3, 2026

  • theislab/DRVI_tutorials’s past year of commit activity

    Jupyter Notebook 0 BSD-3-Clause

    1 0 0

    Updated Mar 3, 2026

  • cellink Public

    Scalable framework for integrating single-cell omics with genetic data using AnnData.

    theislab/cellink’s past year of commit activity

    Python

    13

    Apache-2.0

    2 5 4

    Updated Mar 3, 2026

  • theislab/scRatio’s past year of commit activity

    Jupyter Notebook

    3

    Apache-2.0 0

    0 0

    Updated Mar 3, 2026

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