Tskit developers

@tskit-dev

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Population-scale Ancestral Recombination Graph (ARG) library

Python 178 83
Simulate ARGs and genomic sequence data using population genetic models

Python 210 92
Infer a tree sequence from genetic variation data.

Python 63 17
Infer the age of ancestral nodes in a tree sequence.

Python 25 12
A set of tutorials for msprime and tskit.

Jupyter Notebook 21 19
Gzip-like compression for tskit tree sequences

Python 5 7

Showing 10 of 30 repositories

.github Public
Defaults for github shared across tskit-dev repositories

tskit-dev/.github’s past year of commit activity

0
2 2 0
Updated Mar 26, 2026
kastore Public
The key-array store for read-only numerical data.

tskit-dev/kastore’s past year of commit activity

C
2
MIT
8 2 2
Updated Mar 26, 2026
tszip Public
Gzip-like compression for tskit tree sequences

tskit-dev/tszip’s past year of commit activity

Python
5
MIT
7 2 2
Updated Mar 26, 2026
tsinfer Public
Infer a tree sequence from genetic variation data.

tskit-dev/tsinfer’s past year of commit activity

Python
63
GPL-3.0
17 114 1
Updated Mar 26, 2026
tsdate Public
Infer the age of ancestral nodes in a tree sequence.

tskit-dev/tsdate’s past year of commit activity
tskit-dev/tskit-site’s past year of commit activity

HTML 0
6 23 0
Updated Mar 25, 2026
tskit Public
Population-scale Ancestral Recombination Graph (ARG) library

tskit-dev/tskit’s past year of commit activity
tskit-rust Public
Rust bindings for the tskit library

tskit-dev/tskit-rust’s past year of commit activity

C
18
MIT
7 13 5
Updated Mar 12, 2026
tutorials Public
A set of tutorials for msprime and tskit.

tskit-dev/tutorials’s past year of commit activity

Jupyter Notebook
21
CC-BY-4.0
19 25 4
Updated Mar 11, 2026
tskit-dev/tskit-paper’s past year of commit activity

Python
3 48 1 0
Updated Mar 9, 2026

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