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1. ilastik-shell, applets, and workflows to string them together.

   Python 391 173

2. Tools to handle IMC data

   Python 24 16

3. The repository for the Snakemake implementation of the ImcSegmentationPipeline

   Python 4 2

4. Adds an R implementation for the HistoCAT neightbourhood analysis that runs from CellProfiler output.

   R 7 6

5. This contains the workflows to reproduce all analyses from the Spheroid paper.

   Makefile 2

6. An open-source application for biological image analysis

   Python 1.1k 417